API reference
=============

The reference groups TMol's public classes and functions by modeling task.
Start with :doc:`api/pose`, :doc:`api/io`, and :doc:`api/score`; the
:doc:`api/score_terms` page maps every score type to its implementation.
For an architectural overview and tensor conventions, see
:doc:`architecture` and :doc:`datatypes`.

.. toctree::
   :maxdepth: 2

   api/top_level
   api/chemical
   api/database
   api/io
   api/kinematics
   api/ligand
   api/numeric
   api/optimization
   api/pack
   api/pose
   api/relax
   api/score
   api/analysis
   api/score_terms
   api/types
   api/utility

.. toctree::
   :hidden:

   Concepts <concepts>